MRIQC: individual T1w report

Summary

  • BIDS filename: sub-3321997_ses-bl_T1w.
  • Date and time: 2020-04-23, 11:53.
  • MRIQC version: 0.15.0.
  • Workflow details:
    • Detected hat mask was too small
    • Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)
Background noise

Other

cjv0.21505072314537269
cnr2.6667062401425983
efc0.9394623746936097
fber1.0800206661224365
fwhmavg2.9722899999999997
fwhmx2.8433
fwhmy3.13511
fwhmz2.93846
icvscsf0.09112421575463403
icvsgm0.6687811340205663
icvswm0.24009465022479973
inumed0.4645021855831146
inurange0.11876649260520933
qi10.0
qi20.0
rpvecsf18.785526145040176
rpvegm3.3498169129380786
rpvewm8.426425044670763
sizex176
sizey240
sizez256
snrcsf0.6567250241004366
snrgm8.946773780645941
snrtotal7.83617369793578
snrwm13.905022289060959
snrdcsf0.5340216532662431
snrdgm3.558830598370337
snrdtotal3.6217050531145056
snrdwm6.772262907706938
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk0.0
summarybgmad96.73781235851148
summarybgmean0.0
summarybgmedian0.0
summarybgn1791196.0
summarybgp050.0
summarybgp950.0
summarybgstdv151.78468173173218
summarycsfk4.599108620135303
summarycsfmad63.78578567504883
summarycsfmean124.90315246582031
summarycsfmedian78.85394287109375
summarycsfn33703.0
summarycsfp0521.083657646179198
summarycsfp95381.7595275878906
summarycsfstdv120.06969451904297
summarygmk0.4372679078672772
summarygmmad57.47793960571289
summarygmmean525.1565551757812
summarygmmedian525.4989624023438
summarygmn1319885.0
summarygmp05427.9667175292969
summarygmp95620.6599487304688
summarygmstdv58.73611831665039
summarywmk9.830288814154985
summarywmmad44.56303787231445
summarywmmean985.2039794921875
summarywmmedian999.9962158203125
summarywmn437608.0
summarywmp05848.4935577392579
summarywmp951061.0849975585938
summarywmstdv71.91610717773438
tpmoverlapcsf0.05704004690051079
tpmoverlapgm0.3317098021507263
tpmoverlapwm0.14985433220863342
wm2max0.9046813750674603
AcquisitionMatrixPE240
AcquisitionNumber1
AcquisitionTime12:55:27.400000
BaseResolution256
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20190410 GCC7.4.0
DeviceSerialNumber170014
DwellTime8.2e-06
EchoTime0.00294
ImageOrientationPatientDICOM[-0.00902251, 0.979323, -0.202103, 0.000579044, -0.202107, -0.979363]
ImageType['DERIVED', 'PRIMARY', 'M', 'UNI', 'DIS3D', 'DIS2D']
ImagingFrequency123.251
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressStephanstrasse_1A_Leipzig_District_DE_04103
InstitutionNameMPI_CBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameSkyra_fit
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV93.75
PhaseEncodingSteps238
PhaseResolution1
PixelBandwidth240
ProcedureStepDescriptionMPIL_fMRI-Studies
ProtocolNamet1_mp2rage_p3_32Ch
PulseSequenceDetails%SiemensSeq%_tfl
RawImageFalse
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE240
RefLinesPE32
RepetitionTime5
SAR0.0204785
ScanOptionsIR
ScanningSequenceGR_IR
SequenceName_tfl3d1_16ns
SequenceVariantSK_SP_MP
SeriesDescriptiont1_mp2rage_p3_32Ch_UNI_Images
SeriesNumber12
ShimSetting[7635, -14336, -15037, 154, 490, 121, 563, 14]
SliceThickness1
SoftwareVersionssyngo_MR_E11
StationNameMRC40635
TxRefAmp323.01
md5sumb5e48aa4d80ec258c2247539641eb98f
softwaremriqc
version0.15.0
Rate Image
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For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.